21ED: Human PHF20L1(85-142)

Crystal structure of human PHF20L1(85-142). Determined by X-ray diffraction at 2.31 Å resolution. Released 12 Aug 2026.

Method: X-ray diffraction
Resolution: 2.31 Å
Organism: Homo sapiens
Chains: 1
Atoms: 451
Mol. weight: 6.9 kDa
Released: 12 Aug 2026

Explore 21ED in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

21ED contains 2 α-helices and 5 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 2 helices, 5 β-strands

Element	Residues	Length	Sheet
β-strand	92-96	5	1
β-strand	102-110	9	1
β-strand	115-120	6	1
β-strand	125-129	5	1
α-helix	130-132	3
β-strand	133-135	3	1
α-helix	136-137	2

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
PHD finger protein 20-like protein 1	A	protein	59	Homo sapiens	A8MW92 (AlphaFold model)

Sequence of entity 1 (A), FASTA

>21ED_1 PHD finger protein 20-like protein 1 (chains A)
FDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPEDAKGQ

Primary citation

A revised model for PHF20L1 Tudor function: DNA binding overrides methylation selectivity on nucleosomes. Huang, X., Xiao, Q., Liu, X. et al. J Biol Chem (2026) 302:113181-113181. DOI 10.1016/j.jbc.2026.113181 · PubMed

Other PDB entries of the same protein (UniProt A8MW92 (AlphaFold model), which also has an AlphaFold model), best resolution first:

6L1P 1.23 Å, Crystal structure of PHF20L1 in complex with Hit 1
6L0X 1.3 Å, The First Tudor Domain of PHF20L1
21EE 1.34 Å, Crystal structure of human PHF20L1(1-80) in complex with H3K36me
6L1C 1.58 Å, Crystal Structure Of of PHF20L1 Tudor1 Y24L mutant
6L10 1.6 Å, PHF20L1 Tudor1 - MES
6L1I 1.85 Å, Crystal Structure Of of PHF20L1 Tudor1 Y24W/Y29W mutant
6L1F 1.9 Å, Crystal structure of PHF20L1 Tudor1 in complex with K142me1 DNMT1
2EQM Solution structure of the TUDOR domain of PHD finger protein 20-like 1 [Homo sapiens]
2EQU Solution structure of the tudor domain of PHD finger protein 20-like 1
2JTF Solution Structure of the PHF20L1 MBT domain

Browse structure collections

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