7QJ7: Gamma-tubulin complex component 5

Structure of recombinant human gamma-Tubulin Ring Complex 12-spoked assembly intermediate (spokes 1-12 substoichiometric spokes 13-14). Determined by electron microscopy at 8.7 Å resolution. Released 26 Jan 2022.

Method
Electron microscopy
Resolution
8.7 Å
Organism
Homo sapiens
Chains
37
Atoms
109,579
Mol. weight
2738.54 kDa
Released
26 Jan 2022

Explore 7QJ7 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7QJ7 contains 606 α-helices and 317 β-strands across 37 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain a: 5 helices, 2 β-strands

ElementResiduesLengthSheet
α-helix9-2012
α-helix30-3910
β-strand48130
α-helix51-6414
α-helix68-8417
α-helix90-9910
β-strand122130
Chain A: 32 helices, 8 β-strands
ElementResiduesLengthSheet
α-helix152-16716
α-helix175-1784
α-helix180-1834
α-helix205-2073
α-helix210-22516
β-strand234-236318
α-helix237-2393
α-helix243-2442
β-strand245-247318
α-helix254-28027
α-helix283-2853
α-helix287-31529
α-helix321-3277
α-helix329-34719
α-helix354-3574
α-helix372-38312
α-helix385-39511
β-strand409-411319
β-strand432-434319
α-helix444-4463
α-helix447-46317
α-helix486-50520
α-helix509-51911
α-helix526-54015
β-strand542120
α-helix548-56114
α-helix563-5664
β-strand576121
β-strand611120
β-strand617121
α-helix624-6263
α-helix632-66231
α-helix680-69617
α-helix697-7026
α-helix703-7097
α-helix719-73517
α-helix738-7403
α-helix746-76217
α-helix815-84228
α-helix852-8598
Chain b: 3 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix13-3523
α-helix41-5212
α-helix57-6711
Chain B: 27 helices, 8 β-strands
ElementResiduesLengthSheet
α-helix247-25913
β-strand266-268322
β-strand275-277322
α-helix288-31124
α-helix320-34425
α-helix372-38716
α-helix393-3953
α-helix398-4047
α-helix415-43016
β-strand448-450323
α-helix459-4624
β-strand464-466323
α-helix468-4703
α-helix477-49519
α-helix530-55223
α-helix555-5617
α-helix562-5665
α-helix572-5809
α-helix582-5854
β-strand588124
α-helix594-60714
α-helix615-6206
β-strand623-624225
β-strand633124
β-strand639-640225
α-helix646-6483
α-helix654-68633
α-helix698-72124
α-helix722-7276
α-helix728-74013
α-helix744-76118
α-helix766-7683
α-helix769-81446
α-helix826-86338
α-helix871-88010
Chain c: 10 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix4-1512
α-helix33-4311
α-helix47-504
α-helix67-7913
α-helix83-9614
α-helix108-1147
α-helix143-1453
α-helix158-1669
α-helix169-18214
α-helix191-1944
Chain C: 33 helices, 8 β-strands
ElementResiduesLengthSheet
α-helix152-16716
α-helix174-1785
α-helix179-1835
α-helix210-22415
β-strand233-235326
α-helix236-2372
β-strand246-248326
α-helix2491
α-helix254-27724
α-helix289-2924
α-helix297-31519
α-helix321-3277
α-helix335-34511
α-helix353-3619
α-helix373-39422
β-strand409-411327
β-strand432-434327
α-helix441-4433
α-helix447-46216
α-helix487-50519
α-helix510-5178
α-helix526-54015
β-strand542128
α-helix548-56114
α-helix568-5725
β-strand574-576329
β-strand611128
α-helix613-6153
β-strand617-619329
α-helix626-6283
α-helix632-66231
α-helix679-69618
α-helix697-7026
α-helix703-71210
α-helix713-7153
α-helix719-73618
α-helix746-75611
α-helix757-7615
α-helix766-7683
α-helix817-84226
α-helix854-8596
Chain d: 3 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix20-3314
α-helix41-5313
α-helix57-7418
Chain D: 30 helices, 6 β-strands
ElementResiduesLengthSheet
α-helix247-25913
β-strand266-269431
β-strand274-277431
α-helix287-2948
α-helix296-31015
α-helix319-34527
α-helix374-38714
α-helix393-3953
α-helix409-4157
α-helix419-42911
β-strand448-450332
β-strand464-466332
α-helix468-4703
α-helix477-4826
α-helix484-4929
α-helix493-4975
α-helix534-55118
α-helix556-5616
α-helix562-5665
α-helix571-58010
α-helix582-5865
α-helix589-5913
α-helix594-60411
α-helix615-6206
β-strand621-622233
α-helix634-6374
β-strand641-642233
α-helix648-6503
α-helix654-69037
α-helix698-72023
α-helix721-7288
α-helix729-74012
α-helix750-76112
α-helix769-81042
α-helix827-86438
α-helix874-8785

17 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Gamma-tubulin complex component 5J, lprotein1024Homo sapiensQ96RT8 (AlphaFold model)
actin, cytoplasmic 1eprotein375Homo sapiensA0A6I9HGD1 (AlphaFold model)
Gamma-tubulin complex component 2A, C, E, Gprotein902Homo sapiensQ9BSJ2 (AlphaFold model)
Gamma-tubulin complex component 3B, D, F, H, a, f, h, jprotein907Homo sapiensQ96CW5 (AlphaFold model)
Mitotic-spindle organizing protein 1b, d, g, i, k, mprotein82Homo sapiensQ08AG7
Gamma-tubulin complex component 4I, Kprotein667Homo sapiensQ9UGJ1
Gamma-tubulin complex component 6L, cprotein1819Homo sapiensQ96RT7
Tubulin gamma-1 chainO, P, Q, R, S, T, U, V, W, X, Y, Zprotein451Homo sapiensP23258
Sequence of entity 1 (J, l), FASTA
>7QJ7_1 Gamma-tubulin complex component 5 (chains J, l)
MARHGPPWSRLDAQQERDVRELVRGVAGLQDEADPNFQLALNFAWSNFRFHRFLDVNSHK
IEKTIEGIYEKFVIHSDLSKAASWKRLTEEFLNAPLPSIKEIKTDAHYSILSLLLCLSDS
PSNSSYVETPRNKEVEKKDDFDWGKYLMEDEEMDIGPYMDTPNWSEESEEENDQQPLSRE
DSGIQVDRTPLEEQDQNRKLDPCISWKDEPDDRSWLEHHVVHQYWTARPSQFPHSLHLHS
NLAAVWDQHLYSSDPLYVPDDRVLVTETQVIRETLWLLSGVKKLFIFQLIDGKVTVRNNI
IVTHLTHSCLRSVLEQIAAYGQVVFRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRT
YQAFMWALYKYFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGV
AEVPPDTRNVVRASHLLNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWI
VHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNASASSGSDQG
PSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNLQCAESTTCQAGARDAERKSLYTLFLESV
QSRLRHGEDSTPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLLAINFARMYLEQSDF
HEKFAGGDVCVDRSSESVTCQTFELTLRSCLYPHIDKQYLDCCGNLMQTLKKDYRLVEYL
QAMRNFFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSIS
FENVDTAKKKLPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDV
LLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLHNY
IMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLREKVSFVKEAIMKVLNL
ALMFADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESLALSLMAG
MEQS
Sequence of entity 2 (e), FASTA
>7QJ7_2 actin, cytoplasmic 1 (chains e)
MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
EYDESGPSIVHRKCF
Sequence of entity 3 (A, C, E, G), FASTA
>7QJ7_3 Gamma-tubulin complex component 2 (chains A, C, E, G)
MSEFRIHHDVNELLSLLRVHGGDGAEVYIDLLQKNRTPYVTTTVSAHSAKVKIAEFSRTP
EDFLKKYDELKSKNTRNLDPLVYLLSKLTEDKETLQYLQQNAKERAELAAAAVGSSTTSI
NVPAAASKISMQELEELRKQLGSVATGSTLQQSLELKRKMLRDKQNKKNSGQHLPIFPAW
VYERPALIGDFLIGAGISTDTALPIGTLPLASQESAVVEDLLYVLVGVDGRYVSAQPLAG
RQSRTFLVDPNLDLSIRELVHRILPVAASYSAVTRFIEEKSSFEYGQVNHALAAAMRTLV
KEHLILVSQLEQLHRQGLLSLQKLWFYIQPAMRTMDILASLATSVDKGECLGGSTLSLLH
DRSFSYTGDSQAQELCLYLTKAASAPYFEVLEKWIYRGIIHDPYSEFMVEEHELRKERIQ
EDYNDKYWDQRYTIVQQQIPSFLQKMADKILSTGKYLNVVRECGHDVTCPVAKEIIYTLK
ERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLAEEELR
KPVEDITPPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAM
AHADPTELALSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWI
SNKTAKQHSLHSAQWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASNID
DVLGHHTGFLDTCLKDCMLTNPELLKVFSKLMSVCVMFTNCMQKFTQSMKLDGELGGQTL
EHSTVLGLPAGAEERARKELARKHLAEHADTVQLVSGFEATINKFDKNFSAHLLDLLARL
SIYSTSDCEHGMASVISRLDFNGFYTERLERLSAERSQKATPQVPVLRGPPAPAPRVAVT
AQ
Sequence of entity 4 (B, D, F, H, a, f, h, j), FASTA
>7QJ7_4 Gamma-tubulin complex component 3 (chains B, D, F, H, a, f, h, j)
MATPDQKSPNVLLQNLCCRILGRSEADVAQQFQYAVRVIGSNFAPTVERDEFLVAEKIKK
ELIRQRREADAALFSELHRKLHSQGVLKNKWSILYLLLSLSEDPRRQPSKVSSYATLFAQ
ALPRDAHSTPYYYARPQTLPLSYQDRSAQSAQSSGSVGSSGISSIGLCALSGPAPAPQSL
LPGQSNQAPGVGDCLRQQLGSRLAWTLTANQPSSQATTSKGVPSAVSRNMTRSRREGDTG
GTMEITEAALVRDILYVFQGIDGKNIKMNNTENCYKVEGKANLSRSLRDTAVRLSELGWL
HNKIRRYTDQRSLDRSFGLVGQSFCAALHQELREYYRLLSVLHSQLQLEDDQGVNLGLES
SLTLRRLLVWTYDPKIRLKTLAALVDHCQGRKGGELASAVHAYTKTGDPYMRSLVQHILS
LVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTVKTDRLWHDKYTLRKSMIPSFMTMDQS
RKVLLIGKSINFLHQVCHDQTPTTKMIAVTKSAESPQDAADLFTDLENAFQGKIDAAYFE
TSKYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGI
LETAVRATNAQFDSPEILRRLDVRLLEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHY
LRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQY
YITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLLDSDSRALLNQLRAVFD
QIIELQNAQDAIYRAALEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESI
PKMCSQLRILTHFYQGIVQQFLVLLTTSSDESLRFLSFRLDFNEHYKAREPRLRVSLGTR
GRRSSHT
Sequence of entity 5 (b, d, g, i, k, m), FASTA
>7QJ7_5 Mitotic-spindle organizing protein 1 (chains b, d, g, i, k, m)
MASSSGAGAAAAAAAANLNAVRETMDVLLEISRILNTGLDMETLSICVRLCEQGINPEAL
SSVIKELRKATEALKAAENMTS
Sequence of entity 6 (I, K), FASTA
>7QJ7_6 Gamma-tubulin complex component 4 (chains I, K)
MIHELLLALSGYPGSIFTWNKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIE
QYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSIS
HVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCH
GVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQD
LRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSIL
KNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDF
YLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEY
HGKEHKADATQAREGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFK
YLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQ
FSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQN
LGPLDERGAAQLSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAGG
TLGSFGM
Sequence of entity 7 (L, c), FASTA
>7QJ7_7 Gamma-tubulin complex component 6 (chains L, c)
MASITQLFDDLCEALLPAAKTHLGQRSVNRKRAKRSLKKVAYNALFTNLFQDETQQLQPD
MSKLPARNKILMLSFDLRVGGLGPKADRLEELVEELEAAPCCPLLEVGSVLDLLVQLAGS
GPPQVLPRKRDYFLNNKHVGRNVPYSGYDCDDLSVFEMDVQSLISREECLCHSMIQETLQ
VMEAAPGTGLPTVGLFSFGDPCGDRFERDTRVSLFGALVHSRTYDMDVRLGLPPVPDNAD
LSGLAIKVPPSVDQWEDEGFQSASNLTPDSQSEPSVTPDVDLWEAALTYEASKRRCWERV
GCPPGHREEPYLTEAGRDAFDKFCRLHQGELQLLAGGVLQAPQPVLVKECELVKDVLNVL
IGVVSATFSLCQPAQAFVVKRGVHVSGASPESISSLLSEVAEYGTCYTRLSHFSLQPVLD
SLYSKGLVFQAFTSGLRRYLQYYRACVLSTPPTLSLLTIGFLFKKLGRQLRYLAELCGVG
AVLPGTCGGGPRAAFPTGVKLLSYLYQEALHNCSNEHYPVLLSLLKTSCEPYTRFIHDWV
YSGVFRDAYGEFMIQVNHEYLSFRDKLYWTHGYVLISKEVEDCVPVFLKHIAHDIYVCGK
TINLLKLCCPRHYLCWSDVPVPRISVIFSLEELKEIEKDCAVYVGRMERVARHSSVSKEE
KELRMEIAKQELIAHAREAASRVLSALSDRQMSERMALDARKREQFQRLKEQFVKDQERR
QAARQEELDDDFSYARELRDRERRLKSLEEELERKARQALVDHYSKLSAEAARREQKALW
RIQRHRLESARLRFLLEDEKHIQEMLKAVSEAHQPQEPPDVLLSVHPQVTSPGPEHPEGG
QGCDSGSAEQHSPAWDGWNRPGLLTPQPLKPLAVGAGGRGLQQAEGARPFSDSLSIGDFL
PVGPGAEPSVQTGMVPLLEVALQTINLDLPPSAPGEAPAAASTQPSRPQEYDFSTVLRPA
VATSPAPGPLQAAECSLGSSGLQLWEDSCGKMDACGSASRETLLPSHPPRRAALEEGSSQ
PTERLFGQVSGGGLPTGDYASEIAPTRPRWNTHGHVSDASIRVGENVSDVAPTQPRWNTH
GHVSNASISLGESVSDVAPTRPRWNIHGHVSNASIRVGENVSDVAPTRPRWNTHGHVSNA
SIRVGENVSDVAPTRPRWNTHGHVSDASISLGESVSDMAPARPRWNTHGHVSDASISLGE
SVSDMAPTRPRWNTHGHVSDTSIRVGENVSDVAPIRSRCNTHGHVSDASISLGEPVSDVV
STRPRWNTHVPIPPPHMVLGALSPEAEPNTPRPQQSPPGHTSQSALSLGAQSTVLDCGPR
LPVEVGPSLSSPSSGCGEGSISVGENVSDVAPTQPWWPNTPGDSVSEELGPGRSGDTEDL
SPNWPLNSQEDTAAQSSPGRGEEAEASAAEAQGGEQAYLAGLAGQYHLERYPDSYESMSE
PPIAHLLRPVLPRAFAFPVDPQVQSAADETAVQLSELLTLPVLMKRSITAPLAAHISLVN
KAAVDYFFVELHLEAHYEALRHFLLMEDGEFAQSLSDLLFEKLGAGQTPGELLNPLVLNS
VLSKALQCSLHGDTPHASNLSLALKYLPEVFAPNAPDVLSCLELRYKVDWPLNIVITEGC
VSKYSGVFSFLLQLKLMMWALKDVCFHLKRTALLSHMAGSVQFRQLQLFKHEMQHFVKVI
QGYIANQILHVTWCEFRARLATVGDLEEIQRAHAEYLHKAVFRGLLTEKAAPVMNVIHSI
FSLVLKFRSQLISQAWGPPGGPRGAEHPNFALMQQSYNTFKYYSHFLFKVVTKLVNRGYQ
PHLEDFLLRINFNNYYQDA
Sequence of entity 8 (O, P, Q, R, S, T, U, V, W, X, Y, Z), FASTA
>7QJ7_8 Tubulin gamma-1 chain (chains O, P, Q, R, S, T, U, V, W, X, Y, Z)
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD
VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
KNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVAL
SRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDE
MDTSREIVQQLIDEYHAATRPDYISWGTQEQ

Primary citation

Modular assembly of the principal microtubule nucleator gamma-TuRC. Wurtz, M., Zupa, E., Atorino, E.S. et al. Nat Commun (2022) 13:473-473. DOI 10.1038/s41467-022-28079-0 · PubMed

Other PDB entries of the same protein (UniProt Q96RT8 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

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