9HG8: Outer membrane protein assembly factor BamA

Name: PDB 9HG8: BAM-SurA complex in the swing-out state with BamC resolved
Published: 2025-04-16
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: membrane protein

BAM-SurA complex in the swing-out state with BamC resolved. Determined by electron microscopy at 2.9 Å resolution. Released 16 Apr 2025.

Method: Electron microscopy
Resolution: 2.9 Å
Organism: Escherichia coli K-12
Chains: 6
Atoms: 15,236
Mol. weight: 246.67 kDa
Released: 16 Apr 2025

Explore 9HG8 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

9HG8 contains 70 α-helices and 113 β-strands across 6 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 26 helices, 50 β-strands

Element	Residues	Length	Sheet
β-strand	24	1	1
β-strand	28-32	5	2
α-helix	39-44	6
β-strand	54	1	1
α-helix	56-68	13
β-strand	72-80	9	2
β-strand	83-90	8	2
α-helix	91-92	2
β-strand	93-100	8	3
α-helix	107-116	10
β-strand	124	1	3
α-helix	127-129	3
α-helix	130-144	15
β-strand	150-157	8	3
β-strand	162-170	9	3
α-helix	171-175	5
β-strand	176-183	8	4
α-helix	190-195	6
β-strand	213	1	4
α-helix	216-232	17
β-strand	239-247	9	4
β-strand	253-261	9	4
β-strand	267-276	10	5
α-helix	281-287	7
α-helix	294	1
β-strand	295	1	5
α-helix	296	1
α-helix	298-314	17
β-strand	321-329	9	5
β-strand	334-342	9	5
α-helix	345-347	3
β-strand	348-355	8	6
α-helix	362-366	5
β-strand	376	1	6
α-helix	380-392	13
β-strand	395-404	10	6
α-helix	405	1
β-strand	411-420	10	6
β-strand	425-429	5	7
β-strand	440-446	7	7
α-helix	449-451	3
β-strand	455-462	8	7
β-strand	467-475	9	7
β-strand	484-493	10	7
α-helix	495-496	2
α-helix	497-499	3
β-strand	505-518	14	7
β-strand	523-537	15	7
α-helix	539-541	3
β-strand	542	1	8
α-helix	543-551	9
β-strand	560	1	9
β-strand	564-579	16	7
β-strand	590-600	11	7
α-helix	601	1
β-strand	608-620	13	7
β-strand	628-640	13	7
α-helix	648-650	3
β-strand	652	1	10
β-strand	654	1	11
β-strand	663	1	12
β-strand	668	1	11
β-strand	671-674	4	8
β-strand	677	1	13
β-strand	678	1	9
β-strand	692	1	13
β-strand	700-705	6	8
β-strand	708	1	10
β-strand	710-720	11	7
α-helix	727-732	6
β-strand	733-745	13	7
β-strand	767-778	12	7
β-strand	781-792	12	7
α-helix	797-798	2
β-strand	799	1	12
β-strand	802-806	5	7

Chain B: 7 helices, 40 β-strands

Element	Residues	Length	Sheet
α-helix	33-37	5
β-strand	45-51	7	14
β-strand	66-67	2	15
β-strand	71-74	4	15
β-strand	81-85	5	15
β-strand	91-95	5	15
β-strand	111	1	16
β-strand	116-118	3	16
β-strand	121-126	6	16
β-strand	130-135	6	16
β-strand	141-146	6	16
α-helix	154-155	2
β-strand	156-158	3	17
β-strand	161-166	6	17
β-strand	170-175	6	17
β-strand	181-186	6	17
β-strand	193-194	2	4
α-helix	198-200	3
β-strand	201	1	18
β-strand	206-209	4	18
β-strand	215-220	6	18
β-strand	226-231	6	18
α-helix	240-243	4
β-strand	252-254	3	19
β-strand	257-261	5	19
β-strand	266	1	20
β-strand	267-271	5	19
β-strand	277-279	3	19
β-strand	282	1	20
β-strand	290-292	3	21
β-strand	295-299	5	21
β-strand	305-309	5	21
β-strand	317-318	2	21
β-strand	327	1	22
α-helix	328-330	3
β-strand	331-333	3	23
β-strand	336-340	5	23
β-strand	341	1	22
β-strand	345-349	5	23
β-strand	356-361	6	23
α-helix	366	1
β-strand	367	1	24
α-helix	370-371	2
β-strand	372-374	3	14
β-strand	377-381	5	14
β-strand	382	1	24
β-strand	386-391	6	14

Chain C: 10 helices, 8 β-strands

Element	Residues	Length	Sheet
α-helix	29-31	3
α-helix	40-43	4
α-helix	44-47	4
α-helix	49-53	5
α-helix	58-61	4
α-helix	77-79	3
α-helix	84-85	2
β-strand	94-99	6	25
β-strand	103-108	6	25
α-helix	113-115	3
α-helix	116-126	11
β-strand	131-135	5	25
β-strand	140-143	4	25
β-strand	146-147	2	25
β-strand	158-168	11	25
β-strand	171-183	13	25
β-strand	186-188	3	25
α-helix	191-212	22

Chain D: 12 helices, 0 β-strands

Element	Residues	Length
α-helix	32-45	14
α-helix	48-61	14
α-helix	70-81	12
α-helix	85-98	14
α-helix	105-118	14
α-helix	123-127	5
α-helix	132-134	3
α-helix	138-153	16
α-helix	160-188	29
α-helix	191-204	14
α-helix	209-224	16
α-helix	228-242	15

Chain E: 2 helices, 7 β-strands

Element	Residues	Length	Sheet
β-strand	34-35	2	26
α-helix	40-45	6
β-strand	51	1	27
α-helix	52-59	8
β-strand	65	1	26
β-strand	72-79	8	26
β-strand	87-95	9	26
β-strand	100	1	27
β-strand	101-107	7	26

Chain F: 13 helices, 8 β-strands

Element	Residues	Length	Sheet
β-strand	23-27	5	2
β-strand	28-32	5	28
β-strand	36-38	3	28
α-helix	39-56	18
α-helix	63-87	25
α-helix	93-102	10
α-helix	114-116	3
α-helix	121-123	3
α-helix	125-149	25
α-helix	154-163	10
β-strand	173-182	10	29
α-helix	189-208	20
α-helix	212-218	7
α-helix	223-227	5
β-strand	230-235	6	29
α-helix	236-238	3
α-helix	244-247	4
β-strand	255-260	6	29
β-strand	264-274	11	29
α-helix	393-420	28
β-strand	423-425	3	28

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Outer membrane protein assembly factor BamA	A	protein	790	Escherichia coli K-12	P0A940 (AlphaFold model)
Outer membrane protein assembly factor BamB	B	protein	381	Escherichia coli K-12	P77774 (AlphaFold model)
Outer membrane protein assembly factor BamC	C	protein	320	Escherichia coli K-12	P0A903 (AlphaFold model)
Outer membrane protein assembly factor BamD	D	protein	226	Escherichia coli K-12	P0AC02 (AlphaFold model)
Outer membrane protein assembly factor BamE	E	protein	102	Escherichia coli K-12	P0A937
Chaperone SurA	F	protein	412	Escherichia coli K-12	P0ABZ6

Sequence of entity 1 (A), FASTA

>9HG8_1 Outer membrane protein assembly factor BamA (chains A)
AEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD
GDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDF
YYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLR
DEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNI
TEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP
RVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSD
LVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSF
QAGVQQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDAD
LSDYTNKSYGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEHPSTSD
QDNSFKTDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVP
IDDDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQAS
NYDPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFITPTPFISDKYANSVRTSFFWD
MGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAE
QFQFNIGKTW

Sequence of entity 2 (B), FASTA

>9HG8_2 Outer membrane protein assembly factor BamB (chains B)
CSLFNSEEDVVKMSPLPTVENQFTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAG
LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDG
TVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESA
PTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVF
ALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQ
SDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLL
IQAKDGTVYSITRWSHPQFEK

Sequence of entity 3 (C), FASTA

>9HG8_3 Outer membrane protein assembly factor BamC (chains C)
CSSDSRYKRQVSGDEAYLEAAPLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRP
PAQPLALVSGARTQFTGDTASLLVENGRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTD
WVQWNRLDEDEQYRGRYQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNV
ISAGLDKSATDAANAAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGM
KVTDSTRSQGNMAVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGH
TLTQSQNDALVAVFQAAFSK

Sequence of entity 4 (D), FASTA

>9HG8_4 Outer membrane protein assembly factor BamD (chains D)
CSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAY
YKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQH
ARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVE
GMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT

Sequence of entity 5 (E), FASTA

>9HG8_5 Outer membrane protein assembly factor BamE (chains E)
CSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQ
QPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGNKLHHHHHH

Sequence of entity 6 (F), FASTA

>9HG8_6 Chaperone SurA (chains F)
GSHMAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIM
DQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEM
IISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAE
SQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIV
GPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKS
GKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWH
LIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN

Primary citation

Architecture and conformational dynamics of the BAM-SurA holo insertase complex. Lehner, P.A., Degen, M., Jakob, R.P. et al. Sci Adv (2025) 11:eads6094-eads6094. DOI 10.1126/sciadv.ads6094 · PubMed

Other PDB entries of the same protein (UniProt P0A940 (AlphaFold model), which also has an AlphaFold model), best resolution first:

3Q6B 1.5 Å, The high-resolution and new form crystal structure of BamA POTRA4-5 from E.coli
9CS2 1.78 Å, E. coli BamA beta-barrel bound to cyclic peptide CP3
6QGW 1.94 Å, Crystal structure of E.coli BamA beta-barrel in complex with nanobody E6
9CS0 1.94 Å, E. coli BamA beta-barrel bound to darobactin and cyclic peptide CP1
9CS1 2.15 Å, E. coli BamA beta-barrel bound to darobactin and cyclic peptide CP2
4XGA 2.15 Å, Crystal structure of BamB and BamA P3-5 complex from E.coli
2QDF 2.2 Å, Structure of N-terminal domain of E. Coli YaeT
6QGX 2.2 Å, Crystal structure of E.coli BamA beta-barrel in complex with nanobody F7
7NRF 2.2 Å, Crystal structure of E.coli BamA beta-barrel in complex with darobactin (crystal form 2)
7NRE 2.3 Å, Crystal structure of E.coli BamA beta-barrel in complex with darobactin (crystal form 1)
7P1C 2.5 Å, Crystal structure of E.coli BamA beta-barrel in complex with darobactin B
7R1V 2.5 Å, Crystal structure of E.coli BamA beta-barrel in complex with dynobactin A

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