7QJD: Tubulin gamma-1 chain

Structure of recombinant human gamma-Tubulin Ring Complex without actin. Determined by electron microscopy at 7.1 Å resolution. Released 26 Jan 2022.

Method
Electron microscopy
Resolution
7.1 Å
Organism
Homo sapiens
Chains
42
Atoms
124,666
Mol. weight
3117.79 kDa
Released
26 Jan 2022

Explore 7QJD in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7QJD contains 702 α-helices and 354 β-strands across 42 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chains 1, 2, O, P, Q, R, S, T, U, V, W, X, Y and Z: 19 helices, 19 β-strands

ElementResiduesLengthSheet
β-strand5-951
α-helix12-2817
β-strand3112
α-helix361
β-strand3712
α-helix381
β-strand5213
β-strand6213
β-strand64-6631
β-strand6714
α-helix73-786
α-helix81-833
β-strand9214
α-helix104-11310
α-helix115-12814
β-strand134-13851
α-helix149-16012
β-strand165-17281
α-helix184-19714
β-strand201-20661
α-helix207-21711
α-helix224-23916
α-helix241-2444
α-helix253-2608
β-strand26315
β-strand26615
β-strand268-26921
β-strand270-27346
α-helix290-2978
β-strand30316
β-strand317-32596
α-helix330-34314
β-strand357-36156
α-helix362-3643
β-strand374-38186
α-helix384-40118
α-helix409-4146
α-helix419-43921
Chain a: 5 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix9-2012
α-helix30-3910
α-helix51-6414
α-helix69-8416
α-helix90-9910
Chain A: 33 helices, 8 β-strands
ElementResiduesLengthSheet
α-helix151-16717
α-helix173-1753
α-helix179-1835
α-helix205-2073
α-helix210-22516
β-strand234-235225
α-helix236-2383
β-strand246-247225
α-helix254-2618
α-helix264-27714
α-helix283-2853
α-helix287-31529
α-helix321-3277
α-helix329-34719
α-helix354-3618
α-helix372-39221
α-helix393-3975
β-strand409-411326
β-strand432-434326
α-helix436-4383
α-helix441-4433
α-helix447-46317
α-helix486-50520
α-helix509-51911
α-helix526-54015
β-strand542127
α-helix548-56114
α-helix563-5664
β-strand576-577228
β-strand611127
α-helix612-6154
β-strand616-617228
α-helix624-6263
α-helix632-66231
α-helix678-69619
α-helix697-7026
α-helix703-71210
α-helix719-73517
α-helix747-76317
α-helix815-84228
α-helix852-8598
Chain b: 3 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix13-3422
α-helix41-5313
α-helix57-7014
Chain B: 26 helices, 6 β-strands
ElementResiduesLengthSheet
α-helix247-25812
β-strand266-268329
β-strand275-277329
α-helix288-31326
α-helix318-34326
α-helix369-3713
α-helix372-38817
α-helix393-3964
α-helix398-4047
α-helix415-43016
β-strand449-450230
α-helix459-4624
β-strand464-465230
α-helix477-49519
α-helix530-55223
α-helix555-5617
α-helix562-5665
α-helix572-58514
α-helix594-60714
α-helix615-6195
β-strand621-624431
β-strand639-642431
α-helix654-68734
α-helix695-6973
α-helix698-72124
α-helix722-7276
α-helix728-74013
α-helix744-75411
α-helix756-7616
α-helix770-81445
α-helix826-86338
α-helix871-88010
Chain c: 4 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix67-7913
α-helix83-9614
α-helix108-1147
α-helix158-18225
Chain C: 34 helices, 8 β-strands
ElementResiduesLengthSheet
α-helix152-16716
α-helix180-1834
α-helix210-22415
α-helix229-2302
β-strand233-236432
β-strand245-248432
α-helix2491
α-helix254-26310
α-helix265-28016
α-helix289-2924
α-helix297-31519
α-helix321-3288
α-helix329-3324
α-helix335-34511
α-helix352-3587
α-helix373-39422
β-strand409-411333
β-strand432-434333
α-helix441-4433
α-helix447-46216
α-helix487-50519
α-helix510-5178
α-helix526-5349
α-helix536-5405
β-strand542134
α-helix548-56114
α-helix570-5723
β-strand574-576335
β-strand611134
α-helix612-6154
β-strand617-619335
α-helix624-6274
α-helix632-66231
α-helix679-69618
α-helix697-7026
α-helix703-71210
α-helix713-7153
α-helix719-73618
α-helix747-75913
α-helix765-7684
α-helix817-84226
α-helix854-8596
Chain d: 3 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix18-3316
α-helix41-5313
α-helix57-7418

19 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Tubulin gamma-1 chain1, 2, O, P, Q, R, S, T, U, V, W, X, Y, Zprotein451Homo sapiensP23258 (AlphaFold model)
Gamma-tubulin complex component 2A, C, E, G, Mprotein902Homo sapiensQ9BSJ2 (AlphaFold model)
Gamma-tubulin complex component 3B, D, F, H, N, a, f, h, j, nprotein907Homo sapiensQ96CW5 (AlphaFold model)
Mitotic-spindle organizing protein 1b, d, g, i, k, m, oprotein82Homo sapiensQ08AG7 (AlphaFold model)
Gamma-tubulin complex component 4I, Kprotein667Homo sapiensQ9UGJ1
Gamma-tubulin complex component 5J, lprotein1024Homo sapiensQ96RT8
Gamma-tubulin complex component 6L, cprotein1819Homo sapiensQ96RT7
Sequence of entity 1 (1, 2, O, P, Q, R, S, T, U, V, W, X, Y, Z), FASTA
>7QJD_1 Tubulin gamma-1 chain (chains 1, 2, O, P, Q, R, S, T, U, V, W, X, Y, Z)
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD
VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
KNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVAL
SRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDE
MDTSREIVQQLIDEYHAATRPDYISWGTQEQ
Sequence of entity 2 (A, C, E, G, M), FASTA
>7QJD_2 Gamma-tubulin complex component 2 (chains A, C, E, G, M)
MSEFRIHHDVNELLSLLRVHGGDGAEVYIDLLQKNRTPYVTTTVSAHSAKVKIAEFSRTP
EDFLKKYDELKSKNTRNLDPLVYLLSKLTEDKETLQYLQQNAKERAELAAAAVGSSTTSI
NVPAAASKISMQELEELRKQLGSVATGSTLQQSLELKRKMLRDKQNKKNSGQHLPIFPAW
VYERPALIGDFLIGAGISTDTALPIGTLPLASQESAVVEDLLYVLVGVDGRYVSAQPLAG
RQSRTFLVDPNLDLSIRELVHRILPVAASYSAVTRFIEEKSSFEYGQVNHALAAAMRTLV
KEHLILVSQLEQLHRQGLLSLQKLWFYIQPAMRTMDILASLATSVDKGECLGGSTLSLLH
DRSFSYTGDSQAQELCLYLTKAASAPYFEVLEKWIYRGIIHDPYSEFMVEEHELRKERIQ
EDYNDKYWDQRYTIVQQQIPSFLQKMADKILSTGKYLNVVRECGHDVTCPVAKEIIYTLK
ERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLAEEELR
KPVEDITPPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAM
AHADPTELALSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWI
SNKTAKQHSLHSAQWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASNID
DVLGHHTGFLDTCLKDCMLTNPELLKVFSKLMSVCVMFTNCMQKFTQSMKLDGELGGQTL
EHSTVLGLPAGAEERARKELARKHLAEHADTVQLVSGFEATINKFDKNFSAHLLDLLARL
SIYSTSDCEHGMASVISRLDFNGFYTERLERLSAERSQKATPQVPVLRGPPAPAPRVAVT
AQ
Sequence of entity 3 (B, D, F, H, N, a, f, h, j, n), FASTA
>7QJD_3 Gamma-tubulin complex component 3 (chains B, D, F, H, N, a, f, h, j, n)
MATPDQKSPNVLLQNLCCRILGRSEADVAQQFQYAVRVIGSNFAPTVERDEFLVAEKIKK
ELIRQRREADAALFSELHRKLHSQGVLKNKWSILYLLLSLSEDPRRQPSKVSSYATLFAQ
ALPRDAHSTPYYYARPQTLPLSYQDRSAQSAQSSGSVGSSGISSIGLCALSGPAPAPQSL
LPGQSNQAPGVGDCLRQQLGSRLAWTLTANQPSSQATTSKGVPSAVSRNMTRSRREGDTG
GTMEITEAALVRDILYVFQGIDGKNIKMNNTENCYKVEGKANLSRSLRDTAVRLSELGWL
HNKIRRYTDQRSLDRSFGLVGQSFCAALHQELREYYRLLSVLHSQLQLEDDQGVNLGLES
SLTLRRLLVWTYDPKIRLKTLAALVDHCQGRKGGELASAVHAYTKTGDPYMRSLVQHILS
LVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTVKTDRLWHDKYTLRKSMIPSFMTMDQS
RKVLLIGKSINFLHQVCHDQTPTTKMIAVTKSAESPQDAADLFTDLENAFQGKIDAAYFE
TSKYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGI
LETAVRATNAQFDSPEILRRLDVRLLEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHY
LRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSGVLHQCHILASEMVHFIHQMQY
YITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLLDSDSRALLNQLRAVFD
QIIELQNAQDAIYRAALEELQRRLQFEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESI
PKMCSQLRILTHFYQGIVQQFLVLLTTSSDESLRFLSFRLDFNEHYKAREPRLRVSLGTR
GRRSSHT
Sequence of entity 4 (b, d, g, i, k, m, o), FASTA
>7QJD_4 Mitotic-spindle organizing protein 1 (chains b, d, g, i, k, m, o)
MASSSGAGAAAAAAAANLNAVRETMDVLLEISRILNTGLDMETLSICVRLCEQGINPEAL
SSVIKELRKATEALKAAENMTS
Sequence of entity 5 (I, K), FASTA
>7QJD_5 Gamma-tubulin complex component 4 (chains I, K)
MIHELLLALSGYPGSIFTWNKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIE
QYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSIS
HVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCH
GVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQD
LRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSIL
KNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDF
YLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEY
HGKEHKADATQAREGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFK
YLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQ
FSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQN
LGPLDERGAAQLSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAGG
TLGSFGM
Sequence of entity 6 (J, l), FASTA
>7QJD_6 Gamma-tubulin complex component 5 (chains J, l)
MARHGPPWSRLDAQQERDVRELVRGVAGLQDEADPNFQLALNFAWSNFRFHRFLDVNSHK
IEKTIEGIYEKFVIHSDLSKAASWKRLTEEFLNAPLPSIKEIKTDAHYSILSLLLCLSDS
PSNSSYVETPRNKEVEKKDDFDWGKYLMEDEEMDIGPYMDTPNWSEESEEENDQQPLSRE
DSGIQVDRTPLEEQDQNRKLDPCISWKDEPDDRSWLEHHVVHQYWTARPSQFPHSLHLHS
NLAAVWDQHLYSSDPLYVPDDRVLVTETQVIRETLWLLSGVKKLFIFQLIDGKVTVRNNI
IVTHLTHSCLRSVLEQIAAYGQVVFRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRT
YQAFMWALYKYFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGV
AEVPPDTRNVVRASHLLNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWI
VHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNASASSGSDQG
PSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNLQCAESTTCQAGARDAERKSLYTLFLESV
QSRLRHGEDSTPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLLAINFARMYLEQSDF
HEKFAGGDVCVDRSSESVTCQTFELTLRSCLYPHIDKQYLDCCGNLMQTLKKDYRLVEYL
QAMRNFFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSIS
FENVDTAKKKLPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDV
LLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLHNY
IMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLREKVSFVKEAIMKVLNL
ALMFADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESLALSLMAG
MEQS
Sequence of entity 7 (L, c), FASTA
>7QJD_7 Gamma-tubulin complex component 6 (chains L, c)
MASITQLFDDLCEALLPAAKTHLGQRSVNRKRAKRSLKKVAYNALFTNLFQDETQQLQPD
MSKLPARNKILMLSFDLRVGGLGPKADRLEELVEELEAAPCCPLLEVGSVLDLLVQLAGS
GPPQVLPRKRDYFLNNKHVGRNVPYSGYDCDDLSVFEMDVQSLISREECLCHSMIQETLQ
VMEAAPGTGLPTVGLFSFGDPCGDRFERDTRVSLFGALVHSRTYDMDVRLGLPPVPDNAD
LSGLAIKVPPSVDQWEDEGFQSASNLTPDSQSEPSVTPDVDLWEAALTYEASKRRCWERV
GCPPGHREEPYLTEAGRDAFDKFCRLHQGELQLLAGGVLQAPQPVLVKECELVKDVLNVL
IGVVSATFSLCQPAQAFVVKRGVHVSGASPESISSLLSEVAEYGTCYTRLSHFSLQPVLD
SLYSKGLVFQAFTSGLRRYLQYYRACVLSTPPTLSLLTIGFLFKKLGRQLRYLAELCGVG
AVLPGTCGGGPRAAFPTGVKLLSYLYQEALHNCSNEHYPVLLSLLKTSCEPYTRFIHDWV
YSGVFRDAYGEFMIQVNHEYLSFRDKLYWTHGYVLISKEVEDCVPVFLKHIAHDIYVCGK
TINLLKLCCPRHYLCWSDVPVPRISVIFSLEELKEIEKDCAVYVGRMERVARHSSVSKEE
KELRMEIAKQELIAHAREAASRVLSALSDRQMSERMALDARKREQFQRLKEQFVKDQERR
QAARQEELDDDFSYARELRDRERRLKSLEEELERKARQALVDHYSKLSAEAARREQKALW
RIQRHRLESARLRFLLEDEKHIQEMLKAVSEAHQPQEPPDVLLSVHPQVTSPGPEHPEGG
QGCDSGSAEQHSPAWDGWNRPGLLTPQPLKPLAVGAGGRGLQQAEGARPFSDSLSIGDFL
PVGPGAEPSVQTGMVPLLEVALQTINLDLPPSAPGEAPAAASTQPSRPQEYDFSTVLRPA
VATSPAPGPLQAAECSLGSSGLQLWEDSCGKMDACGSASRETLLPSHPPRRAALEEGSSQ
PTERLFGQVSGGGLPTGDYASEIAPTRPRWNTHGHVSDASIRVGENVSDVAPTQPRWNTH
GHVSNASISLGESVSDVAPTRPRWNIHGHVSNASIRVGENVSDVAPTRPRWNTHGHVSNA
SIRVGENVSDVAPTRPRWNTHGHVSDASISLGESVSDMAPARPRWNTHGHVSDASISLGE
SVSDMAPTRPRWNTHGHVSDTSIRVGENVSDVAPIRSRCNTHGHVSDASISLGEPVSDVV
STRPRWNTHVPIPPPHMVLGALSPEAEPNTPRPQQSPPGHTSQSALSLGAQSTVLDCGPR
LPVEVGPSLSSPSSGCGEGSISVGENVSDVAPTQPWWPNTPGDSVSEELGPGRSGDTEDL
SPNWPLNSQEDTAAQSSPGRGEEAEASAAEAQGGEQAYLAGLAGQYHLERYPDSYESMSE
PPIAHLLRPVLPRAFAFPVDPQVQSAADETAVQLSELLTLPVLMKRSITAPLAAHISLVN
KAAVDYFFVELHLEAHYEALRHFLLMEDGEFAQSLSDLLFEKLGAGQTPGELLNPLVLNS
VLSKALQCSLHGDTPHASNLSLALKYLPEVFAPNAPDVLSCLELRYKVDWPLNIVITEGC
VSKYSGVFSFLLQLKLMMWALKDVCFHLKRTALLSHMAGSVQFRQLQLFKHEMQHFVKVI
QGYIANQILHVTWCEFRARLATVGDLEEIQRAHAEYLHKAVFRGLLTEKAAPVMNVIHSI
FSLVLKFRSQLISQAWGPPGGPRGAEHPNFALMQQSYNTFKYYSHFLFKVVTKLVNRGYQ
PHLEDFLLRINFNNYYQDA

Primary citation

Modular assembly of the principal microtubule nucleator gamma-TuRC. Wurtz, M., Zupa, E., Atorino, E.S. et al. Nat Commun (2022) 13:473-473. DOI 10.1038/s41467-022-28079-0 · PubMed

Other PDB entries of the same protein (UniProt P23258 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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