9KXT: Human B0AT1-ACE2 complex with compound1

Structure of human B0AT1-ACE2 complex with compound1. Determined by electron microscopy at 2.7 Å resolution. Released 10 Dec 2025.

Method
Electron microscopy
Resolution
2.7 Å
Organism
Homo sapiens
Chains
2
Atoms
5,019
Mol. weight
166.91 kDa
Ligands
A1L6U, NAG
Released
10 Dec 2025

Explore 9KXT in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

9KXT contains 41 α-helices and 4 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 40 helices, 4 β-strands

ElementResiduesLengthSheet
α-helix18-214
α-helix39-5315
α-helix57-648
α-helix68-7710
α-helix78-825
α-helix83-9614
α-helix100-1078
α-helix113-14129
α-helix153-1542
β-strand15511
α-helix1561
β-strand16211
α-helix164-1685
α-helix171-1744
α-helix175-1806
α-helix195-21117
α-helix216-24328
α-helix251-2544
α-helix259-2624
α-helix265-27814
α-helix285-2906
α-helix299-34850
α-helix361-3677
α-helix385-3906
α-helix3971
α-helix398-4036
α-helix404-4085
α-helix413-44634
α-helix455-46915
α-helix470-4745
α-helix478-48912
α-helix492-50312
α-helix504-5085
α-helix511-52212
α-helix525-5273
α-helix528-5325
α-helix533-5375
α-helix538-55518
β-strand560-56232
β-strand574-57632
α-helix577-5793
α-helix582-5865
α-helix587-5915
α-helix592-60514
Chain B: 1 helix, 0 β-strands
ElementResiduesLengthSheet
α-helix741-76626

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Sodium-dependent neutral amino acid transporter B(0)AT1Aprotein654Homo sapiensQ695T7 (AlphaFold model)
Angiotensin-converting enzyme 2Bprotein806Homo sapiensQ9BYF1 (AlphaFold model)
Sequence of entity 1 (A), FASTA
>9KXT_1 Sodium-dependent neutral amino acid transporter B(0)AT1 (chains A)
MADYKDDDDKSGPDEVDASGRVRLVLPNPGLDARIPSLAELETIEQEEASSRPKWDNKAQ
YMLTCLGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVLEGIPLLYLEFAIGQRLRRGS
LGVWSSIHPALKGLGLASMLTSFMVGLYYNTIISWIMWYLFNSFQEPLPWSDCPLNENQT
GYVDECARSSPVDYFWYRETLNISTSISDSGSIQWWMLLCLACAWSVLYMCTIRGIETTG
KAVYITSTLPYVVLTIFLIRGLTLKGATNGIVFLFTPNVTELAQPDTWLDAGAQVFFSFS
LAFGGLISFSSYNSVHNNCEKDSVIVSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTN
ILTLINGFDLPEGNVTQENFVDMQQRCNASDPAAYAQLVFQTCDINAFLSEAVEGTGLAF
IVFTEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVVVPLQDLRVIPPKWPKEVLTG
LICLGTFLIGFIFTLNSGQYWLSLLDSYAGSIPLLIIAFCEMFSVVYVYGVDRFNKDIEF
MIGHKPNIFWQVTWRVVSPLLMLIIFLFFFVVEVSQELTYSIWDPGYEEFPKSQKISYPN
WVYVVVVIVAGVPSLTIPGYAIYKLIRNHCQKPGDHQGLVSTLSTASMNGDLKY
Sequence of entity 2 (B), FASTA
>9KXT_2 Angiotensin-converting enzyme 2 (chains B)
MRSSSSWLLLSLVAVTAAQSTIEEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENV
QNMNNAGDKWSAFLKEQSTLAQMYPLQEIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTI
LNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNERLWAWESWRSEVGKQLRPL
YEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEH
LHAYVRAKLMNAYPSYISPIGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVD
QAWDAQRIFKEAEKFFVSVGLPNMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKGDFRIL
MCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGFHEAVGEIMSLSAATPKHLK
SIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKWWE
MKREIVGVVEPVPHDETYCDPASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPL
HKCDISNSTEAGQKLFNMLRLGKSEPWTLALENVVGAKNMNVRPLLNYFEPLFTWLKDQN
KNSFVGWSTDWSPYADQSIKVRISLKSALGDKAYEWNDNEMYLFRSSVAYAMRQYFLKVK
NQMILFGEEDVRVANLKPRISFNFFVTAPKNVSDIIPRTEVEKAIRMSRSRINDAFRLND
NSLEFLGIQPTLGPPNQPPVSIWLIVFGVVMGVIVVGIVILIFTGIRDRKKKNKARSGEN
PYASIDISKGENNPGFQNTDDVQTSF

Ligands and cofactors

IDNameFormulaCopies
A1L6U3-(3-bromophenyl)-~{N}-ethyl-propanamideC11 H14 Br N O1
NAG2-acetamido-2-deoxy-beta-D-glucopyranoseC8 H15 N O61

Primary citation

Structure-guided development of a potent human B 0 AT1 inhibitor effective in a mouse model of phenylketonuria. Imazu, T., Akashi, T., Hiraizumi, M. et al. Commun Biol (2026). DOI 10.1038/s42003-026-10535-y · PubMed

Other PDB entries of the same protein (UniProt Q695T7 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

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