8Q7N: Human spliceosomal B complex protomer
cryo-EM structure of the human spliceosomal B complex protomer (tri-snRNP core region). Determined by electron microscopy at 3.1 Å resolution. Released 24 Jan 2024.
- Method
- Electron microscopy
- Resolution
- 3.1 Å
- Organism
- Homo sapiens
- Chains
- 21
- Atoms
- 55,463
- Mol. weight
- 1427.48 kDa
- Released
- 24 Jan 2024
Explore 8Q7N in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
8Q7N contains 325 α-helices and 198 β-strands across 17 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain 7: 4 helices, 1 β-strand
| Element | Residues | Length | Sheet |
|---|
| β-strand | 412 | 1 | 1 |
| α-helix | 422-431 | 10 | |
| α-helix | 436-449 | 14 | |
| α-helix | 452-454 | 3 | |
| α-helix | 459-471 | 13 | |
Chain A: 108 helices, 76 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 63-73 | 11 | |
| α-helix | 79-81 | 3 | |
| α-helix | 85-90 | 6 | |
| α-helix | 91-93 | 3 | |
| α-helix | 95-104 | 10 | |
| α-helix | 106-108 | 3 | |
| β-strand | 115-121 | 7 | 35 |
| β-strand | 127-129 | 3 | 35 |
| β-strand | 134-135 | 2 | 36 |
| α-helix | 137-157 | 21 | |
| α-helix | 163-165 | 3 | |
| α-helix | 173-177 | 5 | |
| α-helix | 178-182 | 5 | |
| α-helix | 189-191 | 3 | |
| α-helix | 201-204 | 4 | |
| β-strand | 220 | 1 | 37 |
| β-strand | 227-229 | 3 | 37 |
| α-helix | 232-241 | 10 | |
| α-helix | 252-255 | 4 | |
| α-helix | 260-268 | 9 | |
| α-helix | 276-278 | 3 | |
| β-strand | 294 | 1 | 38 |
| α-helix | 299-301 | 3 | |
| α-helix | 310-315 | 6 | |
| α-helix | 317-320 | 4 | |
| α-helix | 329-331 | 3 | |
| α-helix | 334-337 | 4 | |
| α-helix | 357-359 | 3 | |
| β-strand | 379 | 1 | 3 |
| α-helix | 398-405 | 8 | |
| β-strand | 415-417 | 3 | 37 |
| β-strand | 419-420 | 2 | 36 |
| α-helix | 421-423 | 3 | |
| α-helix | 428-431 | 4 | |
| α-helix | 434-435 | 2 | |
| α-helix | 441-460 | 20 | |
| α-helix | 463-466 | 4 | |
| α-helix | 472-477 | 6 | |
| β-strand | 482-488 | 7 | 35 |
| α-helix | 489-510 | 22 | |
| β-strand | 516-518 | 3 | 39 |
| β-strand | 524-526 | 3 | 39 |
| α-helix | 529-531 | 3 | |
| α-helix | 532-537 | 6 | |
| α-helix | 542-565 | 24 | |
| α-helix | 571-583 | 13 | |
| α-helix | 585-588 | 4 | |
| α-helix | 591-593 | 3 | |
| α-helix | 596-598 | 3 | |
| α-helix | 599-616 | 18 | |
| α-helix | 631-659 | 29 | |
| α-helix | 681-695 | 15 | |
| α-helix | 706-721 | 16 | |
| α-helix | 733-762 | 30 | |
| α-helix | 769-797 | 29 | |
| α-helix | 804-820 | 17 | |
| α-helix | 822-824 | 3 | |
| β-strand | 825 | 1 | 40 |
| α-helix | 826-829 | 4 | |
| α-helix | 835-847 | 13 | |
| α-helix | 858-872 | 15 | |
| α-helix | 874-887 | 14 | |
| α-helix | 892-893 | 2 | |
| β-strand | 894-900 | 7 | 41 |
| β-strand | 905-910 | 6 | 41 |
| α-helix | 913-932 | 20 | |
| α-helix | 948-960 | 13 | |
| β-strand | 973-980 | 8 | 42 |
| β-strand | 981 | 1 | 43 |
| α-helix | 990-997 | 8 | |
| β-strand | 1001 | 1 | 40 |
| α-helix | 1003-1013 | 11 | |
| β-strand | 1016-1019 | 4 | 41 |
| β-strand | 1022-1025 | 4 | 41 |
| α-helix | 1037-1062 | 26 | |
| α-helix | 1077-1080 | 4 | |
| β-strand | 1085-1091 | 7 | 42 |
| β-strand | 1094-1101 | 8 | 42 |
| α-helix | 1103-1116 | 14 | |
| β-strand | 1142 | 1 | 38 |
| α-helix | 1145-1159 | 15 | |
| β-strand | 1168 | 1 | 43 |
| β-strand | 1174-1178 | 5 | 42 |
| β-strand | 1185-1188 | 4 | 44 |
| β-strand | 1192 | 1 | 45 |
| β-strand | 1193-1198 | 6 | 44 |
| β-strand | 1213-1217 | 5 | 44 |
| β-strand | 1224-1229 | 6 | 44 |
| β-strand | 1232 | 1 | 45 |
| α-helix | 1234-1249 | 16 | |
| α-helix | 1256-1274 | 19 | |
| α-helix | 1277-1280 | 4 | |
| α-helix | 1282-1303 | 22 | |
| α-helix | 1314-1317 | 4 | |
| α-helix | 1320-1322 | 3 | |
| β-strand | 1334-1335 | 2 | 46 |
| β-strand | 1341-1346 | 6 | 47 |
| β-strand | 1349-1354 | 6 | 47 |
| α-helix | 1360-1362 | 3 | |
| β-strand | 1363-1364 | 2 | 46 |
| α-helix | 1365-1367 | 3 | |
| α-helix | 1369-1371 | 3 | |
| α-helix | 1375-1398 | 24 | |
| β-strand | 1403 | 1 | 33 |
| α-helix | 1419-1423 | 5 | |
| α-helix | 1436-1442 | 7 | |
| α-helix | 1443-1445 | 3 | |
| α-helix | 1468-1477 | 10 | |
| α-helix | 1480-1485 | 6 | |
| α-helix | 1490-1493 | 4 | |
| β-strand | 1501-1504 | 4 | 23 |
| α-helix | 1508-1512 | 5 | |
| α-helix | 1513-1515 | 3 | |
| α-helix | 1520-1524 | 5 | |
| α-helix | 1529-1537 | 9 | |
| α-helix | 1539-1542 | 4 | |
| β-strand | 1553-1554 | 2 | 48 |
| β-strand | 1561-1562 | 2 | 48 |
| α-helix | 1567-1576 | 10 | |
| α-helix | 1581-1599 | 19 | |
| β-strand | 1606-1611 | 6 | 49 |
| β-strand | 1629-1639 | 11 | 49 |
| α-helix | 1640-1642 | 3 | |
| β-strand | 1643-1644 | 2 | 49 |
| β-strand | 1655-1667 | 13 | 49 |
| α-helix | 1676-1688 | 13 | |
| β-strand | 1700-1706 | 7 | 49 |
| β-strand | 1711-1716 | 6 | 49 |
| α-helix | 1722-1735 | 14 | |
| α-helix | 1738-1751 | 14 | |
| β-strand | 1753-1755 | 3 | 23 |
| α-helix | 1759-1761 | 3 | |
| β-strand | 1762-1763 | 2 | 50 |
| α-helix | 1769-1772 | 4 | |
| β-strand | 1777-1778 | 2 | 51 |
| β-strand | 1779-1781 | 3 | 52 |
| β-strand | 1787-1792 | 6 | 53 |
| β-strand | 1798-1803 | 6 | 53 |
| β-strand | 1805-1810 | 6 | 52 |
| β-strand | 1818-1822 | 5 | 52 |
| α-helix | 1824-1827 | 4 | |
| α-helix | 1834-1849 | 16 | |
| β-strand | 1860-1862 | 3 | 51 |
| α-helix | 1866-1868 | 3 | |
| α-helix | 1869-1875 | 7 | |
| β-strand | 1883-1885 | 3 | 51 |
| β-strand | 1886-1887 | 2 | 50 |
| α-helix | 1895-1898 | 4 | |
| α-helix | 1900-1906 | 7 | |
| β-strand | 1914-1916 | 3 | 52 |
| α-helix | 1923-1925 | 3 | |
| α-helix | 1929-1945 | 17 | |
| α-helix | 1949-1953 | 5 | |
| α-helix | 1973-1995 | 23 | |
| α-helix | 1999-2001 | 3 | |
| α-helix | 2004-2012 | 9 | |
| β-strand | 2040-2041 | 2 | 18 |
| β-strand | 2042-2046 | 5 | 20 |
| β-strand | 2054-2058 | 5 | 20 |
| α-helix | 2073-2080 | 8 | |
| α-helix | 2084-2086 | 3 | |
| β-strand | 2091-2092 | 2 | 54 |
| β-strand | 2104-2107 | 4 | 55 |
| α-helix | 2108-2116 | 9 | |
| β-strand | 2124-2129 | 6 | 54 |
| β-strand | 2140-2141 | 2 | 55 |
| β-strand | 2144-2146 | 3 | 54 |
| β-strand | 2150 | 1 | 56 |
| β-strand | 2151-2152 | 2 | 57 |
| β-strand | 2157-2158 | 2 | 57 |
| α-helix | 2163-2164 | 2 | |
| β-strand | 2176-2180 | 5 | 54 |
| α-helix | 2190-2202 | 13 | |
| β-strand | 2212-2218 | 7 | 54 |
| β-strand | 2223-2230 | 8 | 54 |
| α-helix | 2232-2240 | 9 | |
| α-helix | 2253-2255 | 3 | |
| β-strand | 2256-2259 | 4 | 54 |
| β-strand | 2261-2264 | 4 | 55 |
| β-strand | 2270-2274 | 5 | 54 |
| β-strand | 2280 | 1 | 56 |
| β-strand | 2296-2298 | 3 | 54 |
| α-helix | 2300-2303 | 4 | |
| α-helix | 2311-2315 | 5 | |
Chain C: 39 helices, 38 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 116-124 | 9 | |
| α-helix | 126-128 | 3 | |
| β-strand | 129-136 | 8 | 2 |
| α-helix | 142-153 | 12 | |
| α-helix | 172-177 | 6 | |
| β-strand | 184-191 | 8 | 2 |
| β-strand | 197-204 | 8 | 2 |
| α-helix | 209-211 | 3 | |
| α-helix | 212-219 | 8 | |
| β-strand | 224-230 | 7 | 2 |
| α-helix | 237-248 | 12 | |
| β-strand | 252-258 | 7 | 2 |
| α-helix | 262-266 | 5 | |
| α-helix | 271-291 | 21 | |
| β-strand | 307-311 | 5 | 2 |
| β-strand | 316-318 | 3 | 2 |
| α-helix | 320-331 | 12 | |
| α-helix | 336-340 | 5 | |
| β-strand | 348-350 | 3 | 3 |
| β-strand | 355-357 | 3 | 3 |
| α-helix | 368-369 | 2 | |
| α-helix | 370-374 | 5 | |
| α-helix | 375-386 | 12 | |
| α-helix | 392-398 | 7 | |
| α-helix | 405-408 | 4 | |
| α-helix | 412-424 | 13 | |
| α-helix | 428-436 | 9 | |
| α-helix | 441-452 | 12 | |
| β-strand | 453 | 1 | 4 |
| β-strand | 475-483 | 9 | 5 |
| β-strand | 490-498 | 9 | 5 |
| β-strand | 501-502 | 2 | 6 |
| β-strand | 506-510 | 5 | 5 |
| β-strand | 522-526 | 5 | 5 |
| β-strand | 530-533 | 4 | 5 |
| β-strand | 534 | 1 | 2 |
| β-strand | 538-541 | 4 | 5 |
| β-strand | 543-544 | 2 | 6 |
| β-strand | 549-553 | 5 | 5 |
| β-strand | 563-566 | 4 | 5 |
| β-strand | 577 | 1 | 4 |
| α-helix | 578-582 | 5 | |
| β-strand | 588-594 | 7 | 7 |
| α-helix | 597-599 | 3 | |
| α-helix | 600-613 | 14 | |
| β-strand | 618-621 | 4 | 7 |
| β-strand | 627-631 | 5 | 7 |
| α-helix | 634-642 | 9 | |
| α-helix | 643-649 | 7 | |
| β-strand | 653-655 | 3 | 7 |
| α-helix | 656-658 | 3 | |
| β-strand | 659-660 | 2 | 7 |
| β-strand | 663-666 | 4 | 8 |
| β-strand | 674-677 | 4 | 9 |
| β-strand | 684-690 | 7 | 9 |
| α-helix | 691-693 | 3 | |
| α-helix | 696-701 | 6 | |
| α-helix | 711-720 | 10 | |
| α-helix | 726-730 | 5 | |
| β-strand | 732-736 | 5 | 9 |
| β-strand | 743-747 | 5 | 9 |
| α-helix | 756-760 | 5 | |
| α-helix | 763-776 | 14 | |
| β-strand | 784 | 1 | 8 |
| β-strand | 787-795 | 9 | 9 |
| α-helix | 805-821 | 17 | |
| β-strand | 825-838 | 14 | 8 |
| α-helix | 840-842 | 3 | |
| α-helix | 843-852 | 10 | |
| β-strand | 856-862 | 7 | 8 |
| α-helix | 863 | 1 | |
| β-strand | 869-876 | 8 | 8 |
| α-helix | 877-879 | 3 | |
| α-helix | 883-890 | 8 | |
| β-strand | 896-906 | 11 | 8 |
| α-helix | 907 | 1 | |
| α-helix | 926-941 | 16 | |
Chain D: 4 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 7-8 | 2 | 10 |
| α-helix | 11-19 | 9 | |
| β-strand | 25-31 | 7 | 10 |
| α-helix | 36-49 | 14 | |
| β-strand | 56-61 | 6 | 10 |
| α-helix | 69-73 | 5 | |
| β-strand | 79-84 | 6 | 10 |
| β-strand | 89 | 1 | 10 |
| β-strand | 91-93 | 3 | 11 |
| β-strand | 102 | 1 | 10 |
| α-helix | 109-124 | 16 | |
| β-strand | 129-131 | 3 | 11 |
Chain F: 6 helices, 29 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 82-96 | 15 | |
| α-helix | 105-114 | 10 | |
| α-helix | 126-139 | 14 | |
| α-helix | 144-151 | 8 | |
| β-strand | 168-169 | 2 | 25 |
| α-helix | 172-201 | 30 | |
| α-helix | 204-219 | 16 | |
| β-strand | 221-228 | 8 | 26 |
| β-strand | 234-239 | 6 | 27 |
| β-strand | 245-250 | 6 | 27 |
| β-strand | 255-259 | 5 | 27 |
| β-strand | 265-269 | 5 | 27 |
| β-strand | 276-281 | 6 | 28 |
| β-strand | 296-300 | 5 | 28 |
| β-strand | 305-308 | 4 | 28 |
| β-strand | 317-319 | 3 | 28 |
| β-strand | 326-331 | 6 | 29 |
| β-strand | 337-342 | 6 | 29 |
| β-strand | 347-351 | 5 | 29 |
| β-strand | 357-361 | 5 | 29 |
| β-strand | 368-373 | 6 | 30 |
| β-strand | 379-384 | 6 | 30 |
| β-strand | 389-393 | 5 | 30 |
| β-strand | 398-402 | 5 | 30 |
| β-strand | 410-415 | 6 | 31 |
| β-strand | 421-426 | 6 | 31 |
| β-strand | 431-435 | 5 | 31 |
| β-strand | 440-445 | 6 | 31 |
| β-strand | 452-457 | 6 | 32 |
| β-strand | 464-469 | 6 | 32 |
| β-strand | 473-478 | 6 | 32 |
| β-strand | 484-489 | 6 | 32 |
| β-strand | 495-500 | 6 | 26 |
| β-strand | 506-511 | 6 | 26 |
| β-strand | 515-521 | 7 | 26 |
Chain I: 14 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 5-6 | 2 | |
| α-helix | 12-14 | 3 | |
| α-helix | 17-20 | 4 | |
| α-helix | 23-30 | 8 | |
| α-helix | 33-37 | 5 | |
| α-helix | 44-52 | 9 | |
| β-strand | 57 | 1 | 12 |
| β-strand | 60-61 | 2 | 13 |
| β-strand | 66-67 | 2 | 13 |
| α-helix | 69-80 | 12 | |
| α-helix | 84-92 | 9 | |
| α-helix | 97-110 | 14 | |
| α-helix | 113-120 | 8 | |
| α-helix | 121-125 | 5 | |
| β-strand | 129-133 | 5 | 12 |
| β-strand | 139-143 | 5 | 12 |
| α-helix | 144-153 | 10 | |
| β-strand | 156-157 | 2 | 14 |
| β-strand | 160-161 | 2 | 14 |
| α-helix | 162-167 | 6 | |
| α-helix | 168-173 | 6 | |
Chain J: 13 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 389-394 | 6 | |
| β-strand | 417-418 | 2 | 25 |
| β-strand | 437 | 1 | 1 |
| α-helix | 442-465 | 24 | |
| α-helix | 470-474 | 5 | |
| α-helix | 481-484 | 4 | |
| α-helix | 486-491 | 6 | |
| α-helix | 493-518 | 26 | |
| α-helix | 519-521 | 3 | |
| α-helix | 522-534 | 13 | |
| β-strand | 541-548 | 8 | 58 |
| α-helix | 554-566 | 13 | |
| β-strand | 570-575 | 6 | 58 |
| β-strand | 580-586 | 7 | 58 |
| α-helix | 588-596 | 9 | |
| α-helix | 597-601 | 5 | |
| β-strand | 630-638 | 9 | 58 |
| β-strand | 647-650 | 4 | 58 |
| α-helix | 654-664 | 11 | |
| α-helix | 667-682 | 16 | |
Chain K: 4 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 272-313 | 42 | |
| α-helix | 334-336 | 3 | |
| α-helix | 339-341 | 3 | |
| α-helix | 354-357 | 4 | |
9 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| U5 snRNA | 5 | RNA | 117 | Homo sapiens | |
| U6 snRNA | 6 | RNA | 106 | Homo sapiens | |
| Splicing factor 3A subunit 1 | 7 | protein | 793 | Homo sapiens | Q15459 (AlphaFold model) |
| 116 kDa U5 small nuclear ribonucleoprotein component | C | protein | 972 | Homo sapiens | Q15029 (AlphaFold model) |
| Thioredoxin-like protein 4A | D | protein | 142 | Homo sapiens | P83876 (AlphaFold model) |
| Pre-mRNA-splicing factor 38A | I | protein | 312 | Homo sapiens | Q8NAV1 (AlphaFold model) |
| Microfibrillar-associated protein 1 | K | protein | 439 | Homo sapiens | P55081 |
| NHP2-like protein 1, N-terminally processed | M | protein | 128 | Homo sapiens | P55769 |
| Protein BUD31 homolog | Q | protein | 144 | Homo sapiens | P41223 |
| WW domain-binding protein 4 | X | protein | 376 | Homo sapiens | O75554 |
| MINX pre-mRNA | Z | RNA | 347 | Homo sapiens | |
| Zinc finger matrin-type protein 2 | r | protein | 199 | Homo sapiens | Q96NC0 |
9 more molecules are not listed.
Sequence of entity 1 (5), FASTA
>8Q7N_1 U5 snRNA (chains 5)
AUACUCUGGUUUCUCUUCAGAUCGCAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGG
AGAGGAACAACUCUGAGUCUUAACCCAAUUUUUUGAGGCCUUGCUUUGGCAAGGCUA
Sequence of entity 2 (6), FASTA
>8Q7N_2 U6 snRNA (chains 6)
GUGCUCGCUUCGGCAGCACAUAUACUAAAAUUGGAACGAUACAGAGAAGAUUAGCAUGGC
CCCUGCGCAAGGAUGACACGCAAAUUCGUGAAGCGUUCCAUAUUUU
Sequence of entity 3 (7), FASTA
>8Q7N_3 Splicing factor 3A subunit 1 (chains 7)
MPAGPVQAVPPPPPVPTEPKQPTEEEASSKEDSAPSKPVVGIIYPPPEVRNIVDKTASFV
ARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQ
QQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQ
FLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVL
DQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTT
PEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEGSD
DEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKI
PASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVE
ETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDD
TKEKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRP
PMASVVRLPPGSVIAPMPPIIHAPRINVVPMPPSAPPIMAPRPPPMIVPTAFVPAPPVAP
VPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEW
KLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAV
IHLALKERGGRKK
Sequence of entity 4 (C), FASTA
>8Q7N_4 116 kDa U5 small nuclear ribonucleoprotein component (chains C)
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
Sequence of entity 5 (D), FASTA
>8Q7N_5 Thioredoxin-like protein 4A (chains D)
MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL
VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY
RGARKGRGLVVSPKDYSTKYRY
Sequence of entity 6 (I), FASTA
>8Q7N_6 Pre-mRNA-splicing factor 38A (chains I)
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL
EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR
VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDKPRRSPTLRYRRSRSRSPR
RRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPGHHRSHRHRSHSKSPERS
KKSHKKSRRGNE
Sequence of entity 7 (K), FASTA
>8Q7N_7 Microfibrillar-associated protein 1 (chains K)
MSVPSALMKQPPIQSTAGAVPVRNEKGEISMEKVKVKRYVSGKRPDYAPMESSDEEDEEF
QFIKKAKEQEAEPEEQEEDSSSDPRLRRLQNRISEDVEERLARHRKIVEPEVVGESDSEV
EGDAWRMEREDSSEEEEEEIDDEEIERRRGMMRQRAQERKNEEMEVMEVEDEGRSGEESE
SESEYEEYTDSEDEMEPRLKPVFIRKKDRVTVQEREAEALKQKELEQEAKRMAEERRKYT
LKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEAWKVRELKRIKRDREDREALEKE
KAEIERMRNLTEEERRAELRANGKVITNKAVKGKYKFLQKYYHRGAFFMDEDEEVYKRDF
SAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQESAQNTKFFKQK
AAGVRDVFERPSAKKRKTT
Sequence of entity 8 (M), FASTA
>8Q7N_8 NHP2-like protein 1, N-terminally processed (chains M)
MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
QSIERLLV
Sequence of entity 9 (Q), FASTA
>8Q7N_9 Protein BUD31 homolog (chains Q)
MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
VPKSKLEVGRIIECTHCGCRGCSG
Sequence of entity 10 (X), FASTA
>8Q7N_10 WW domain-binding protein 4 (chains X)
MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEK
ASKEFAAMEAAALKAYQEDLKRLGLESEILEPSITPVTSTIPPTSTSNQQKEKKEKKKRK
KDPSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTY
YYNTETGESRWEKPDDFIPHTSDLPSSKVNENSLGTLDESKSSDSHSDSDGEQEAEEGGV
STETEKPKIKFKEKNKNSDGGSDPETQKEKSIQKQNSLGSNEEKSKTLKKSNPYGEWQEI
KQEVESHEEVDLELPSTENEYVSTSEADGGGEPKVVFKEKTVTSLGVMADGVAPVFKKRR
TENGKSRNLRQRGDDQ
Sequence of entity 11 (Z), FASTA
>8Q7N_11 MINX pre-mRNA (chains Z)
GGUACCUAAUACGACUCACUAUAGGGAGACGGAAUUCGAGCUCGCCCACUCUUGGAUCGG
AAACCCGUCGGCCUCCGAACGGUAAGAGCCUAGCAUGUAGAACUGGUUACCUGCAGCCCA
AGCUUGCUGCACGUCUAGGGCGCAGUAGUCCAGGGUUUCCUUGAUGAUGUCAUACUUAUC
CUGUCCCUUUUUUUUCCACAGCUCGCGGUUGAGGACAAACUCUUCGCGGUCUUUCCAGUG
GGGAUCCAAUAUCCGUACACCAUCAGGGUACGAGCUAGCCCAUGGCGUACACCAUCAGGG
UACGACUAGUAGAUCUCGUACACCAUCAGGGUACGGAAUUCUCUAGA
Sequence of entity 12 (r), FASTA
>8Q7N_12 Zinc finger matrin-type protein 2 (chains r)
MASGSGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES
KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD
QVKKRFEVNKKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEED
DEMAAVMGFSGFGSTKKSY
Primary citation
Cryo-EM analyses of dimerized spliceosomes provide new insights into the functions of B complex proteins. Zhang, Z., Kumar, V., Dybkov, O. et al. EMBO J (2024) 43:1065-1088. DOI 10.1038/s44318-024-00052-1 · PubMed
Other PDB entries of the same protein (UniProt Q15459 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7P0V 1.56 Å, Crystal structure of human SF3A1 ubiquitin-like domain in complex with U1 snRNA…
- 8ID2 1.8 Å, Crystal structure of the ubiquitin-like domain in the SF3A1 subunit of human U2 snRNP…
- 7EVO 2.5 Å, The cryo-EM structure of the human 17S U2 snRNP
- 8H6L 2.6 Å, Cryo-EM structure of human exon-defined spliceosome in the early B state.
- 8H6K 2.7 Å, Cryo-EM structure of human exon-defined spliceosome in the mature B state.
- 8HK1 2.7 Å, The cryo-EM structure of human pre-17S U2 snRNP
- 7VPX 3.0 Å, The cryo-EM structure of the human pre-A complex
- 8I0R 3.0 Å, The cryo-EM structure of human Bact-I complex
- 8I0T 3.0 Å, The cryo-EM structure of human Bact-III complex
- 8QOZ 3.1 Å, Cryo-EM Structure of Pre-B+5'ss+ATPgammaS Complex (core part)
- 8QPE 3.1 Å, Cryo-EM Structure of Pre-B-like Complex (core part)
- 8H6E 3.2 Å, Cryo-EM structure of human exon-defined spliceosome in the late pre-B state.
Browse structure collections
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