5MJY: PDB entry 5MJY

Crystal structure of the His Domain Protein Tyrosine Phosphatase (HD-PTP/PTPN23) Bro1 domain (SARA complex structure). Determined by X-ray diffraction at 2.25 Å resolution. Released 16 Aug 2017.

Method: X-ray diffraction
Resolution: 2.25 Å
Organism: Homo sapiens
Chains: 6
Atoms: 12,216
Mol. weight: 168.3 kDa
Released: 16 Aug 2017

Explore 5MJY in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

5MJY contains 78 α-helices and 12 β-strands across 6 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 17 helices, 3 β-strands

Element	Residues	Length	Sheet
α-helix	13-16	4
β-strand	17-20	4	1
α-helix	23-34	12
α-helix	39-56	18
α-helix	62-81	20
β-strand	94-97	4	1
β-strand	104-107	4	1
α-helix	110-131	22
α-helix	137-160	24
α-helix	167-169	3
α-helix	171-195	25
α-helix	200-221	22
α-helix	224-230	7
α-helix	232-263	32
α-helix	266-286	21
α-helix	292-315	24
α-helix	316-320	5
α-helix	331-335	5
α-helix	341-343	3
α-helix	349-352	4

Chain B: 20 helices, 3 β-strands

Element	Residues	Length	Sheet
α-helix	4-8	5
α-helix	12-15	4
β-strand	17	1	2
α-helix	22-29	8
α-helix	30-34	5
α-helix	38-41	4
α-helix	42-56	15
α-helix	62-81	20
β-strand	94-97	4	2
β-strand	104-107	4	2
α-helix	110-131	22
α-helix	137-160	24
α-helix	167-169	3
α-helix	171-195	25
α-helix	200-221	22
α-helix	224-230	7
α-helix	232-262	31
α-helix	266-286	21
α-helix	292-315	24
α-helix	316-320	5
α-helix	327-329	3
α-helix	331-335	5
α-helix	349-352	4

Chain C: 20 helices, 3 β-strands

Element	Residues	Length	Sheet
α-helix	4-8	5
α-helix	12-16	5
β-strand	17	1	3
α-helix	22-29	8
α-helix	30-34	5
α-helix	38-41	4
α-helix	42-56	15
α-helix	62-81	20
β-strand	94-97	4	3
β-strand	104-107	4	3
α-helix	110-131	22
α-helix	137-160	24
α-helix	167-169	3
α-helix	171-195	25
α-helix	200-222	23
α-helix	224-230	7
α-helix	232-262	31
α-helix	266-286	21
α-helix	292-315	24
α-helix	316-320	5
α-helix	327-329	3
α-helix	331-335	5
α-helix	349-352	4

Chain D: 19 helices, 3 β-strands

Element	Residues	Length	Sheet
α-helix	13-16	4
β-strand	17-20	4	4
α-helix	23-34	12
α-helix	38-41	4
α-helix	42-56	15
α-helix	62-81	20
β-strand	94-97	4	4
β-strand	104-107	4	4
α-helix	110-131	22
α-helix	137-160	24
α-helix	167-169	3
α-helix	171-195	25
α-helix	200-221	22
α-helix	224-230	7
α-helix	232-262	31
α-helix	266-286	21
α-helix	292-315	24
α-helix	316-320	5
α-helix	327-329	3
α-helix	331-335	5
α-helix	342-344	3
α-helix	349-352	4

Chains E and F: 1 helix, 0 β-strands

Element	Residues	Length	Sheet
α-helix	4-20	17

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Tyrosine-protein phosphatase non-receptor type 23	A, B, C, D	protein	361	Homo sapiens	Q9H3S7 (AlphaFold model)
Zinc finger FYVE domain-containing protein 9	E, F	protein	22	Homo sapiens	O95405 (AlphaFold model)

Sequence of entity 1 (A, B, C, D), FASTA

>5MJY_1 Tyrosine-protein phosphatase non-receptor type 23 (chains A, B, C, D)
MEAVPRMPMIWLDLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQNAVRVPR
DFEGCSVLRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFSGKSVAHEDIKYEQACILYN
LGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAYSVDMSRQILTLNVNL
MLGQAQECLLEKSMLDNRKSFLVARISAQVVDYYKEACRALENPDTASLLGRIQKDWKKL
VQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIKLAKGQPDTVQDALRF
TMDVIGGKYNSAKKDNDFIYHEAVPALDTLQPVKGAPLVKPLPVNPTDPAVTGPDIFAKL
V

Sequence of entity 2 (E, F), FASTA

>5MJY_2 Zinc finger FYVE domain-containing protein 9 (chains E, F)
MENYFQAEAYNLDKVLDEFEQN

Primary citation

Structural Basis for Specific Interaction of TGF beta Signaling Regulators SARA/Endofin with HD-PTP. Gahloth, D., Levy, C., Walker, L. et al. Structure (2017) 25:1011-1024.e4. DOI 10.1016/j.str.2017.05.005 · PubMed

Other PDB entries of the same protein (UniProt Q9H3S7 (AlphaFold model), which also has an AlphaFold model), best resolution first:

5MK2 1.7 Å, Crystal structure of the His Domain Protein Tyrosine Phosphatase (HD-PTP/PTPN23) Bro1…
5MK0 1.76 Å, Crystal structure of the His Domain Protein Tyrosine Phosphatase (HD-PTP/PTPN23) Bro1…
5MJZ 1.87 Å, Crystal structure of the His Domain Protein Tyrosine Phosphatase (HD-PTP/PTPN23) Bro1…
3RAU 1.95 Å, Crystal structure of the HD-PTP Bro1 domain
5MK3 2.0 Å, Crystal structure of the His Domain Protein Tyrosine Phosphatase (HD-PTP/PTPN23) Bro 1…
5CRV 2.0 Å, Crystal structure of the Bro domain of HD-PTP in a complex with the core region of STAM2
5CRU 2.4 Å, Crystal structure of the Bro domain of HD-PTP
5MK1 2.5 Å, Crystal structure of the His Domain Protein Tyrosine Phosphatase (HD-PTP/PTPN23) Bro1…
5LM2 2.54 Å, Crystal Structure of HD-PTP phosphatase
5LM1 2.55 Å, Crystal Structure of HD-PTP phosphatase in complex with UBAP1

Browse structure collections

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