DNA replication complex GINS protein SLD5 (SLD5) is a 294-residue protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q03406.
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The mean pLDDT of this model is 73.4 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 22% |
| 70 to 90 | Confident: backbone generally right | 41% |
| 50 to 70 | Low: treat with caution | 24% |
| Below 50 | Very low: often disordered regions | 14% |
What pLDDT means and how to read it
Functions as part of the GINS complex which plays an essential role in the initiation of DNA replication by binding to DNA replication origins and facilitating the assembly of the DNA replication machinery
Component of the GINS complex which is a heterotetramer composed of SLD5, PSF1, PSF2 and PSF3. Interacts with PSF2
Nucleus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 5NXQ | X-ray | 2.41 Å | D/E=1-19 |
| 4C95 | X-ray | 2.69 Å | D/E=1-19 |
| 8KG6 | EM | 3.07 Å | D=1-294 |
| 7PMK | EM | 3.2 Å | D=1-294 |
| 7PMN | EM | 3.2 Å | D=1-294 |
| 9E2Y | EM | 3.2 Å | D=1-294 |
| 7QHS | EM | 3.3 Å | D=1-294 |
| 9E2W | EM | 3.3 Å | D=1-294 |
| 7Z13 | EM | 3.4 Å | D/K=1-294 |
| 8B9A | EM | 3.5 Å | F=1-294 |
| 8B9B | EM | 3.5 Å | F=1-294 |
| 9E2X | EM | 3.5 Å | D=1-294 |
| 3JC6 | EM | 3.7 Å | D=1-294 |
| 6SKL | EM | 3.7 Å | D=1-294 |
| 8P63 | EM | 3.7 Å | D=1-294 |
| 8XGC | EM | 3.7 Å | D=1-294 |
| 6PTJ | EM | 3.8 Å | D=1-294 |
| 6U0M | EM | 3.9 Å | D=3-293 |
| 8P5E | EM | 3.9 Å | D=1-294 |
| 8P62 | EM | 3.9 Å | D=1-294 |
Showing 20 of 32 experimental structures (best resolution first).
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